SPINE
SPINE (Simulator for Plasticity and Integrated Neuronal Events) — A Python-based simulation framework for modeling coupled voltage, calcium, and synaptic dynamics in neuronal networks. SPINE couples the cable equation with spatially-distributed calcium dynamics, ER calcium stores, and IP3 signaling on realistic SWC morphologies, and supports network-level inter-neuron synaptic coupling. Built on NumPy and SciPy with no compilation required. Currently in beta. Contact me for GitHub access.
Neuro-VISOR
Neuro-VISOR — An immersive virtual reality application for visualizing and interacting with neuron simulations in real time, designed for use in both research and educational settings. Built with Unity/C#, Neuro-VISOR allows users to load neuron geometries, run PDE-based simulations (e.g., Hodgkin-Huxley) on neuronal structures, and interact with the simulation through voltage clamps, synaptic connections, and data plotting. Supports both VR headsets and desktop environments. Developed at Temple University’s Center for Computational Mathematics and Modeling.